A common framework for designing portable federated pipelines

This video describes a common framework for designing portable federated pipelines. The joint cohort genotyping pipeline is provided as a specific implementation example. The ability of the pipeline to run in different environments, accessing the data via different protocols, and applying the appropriate normalisations is demonstrated.

Extensive documentation can be found in this github repository: https://github.com/CINECA-project/wp4-federated-joint-cohort-analysis/tree/master/4.3-pipelines/demonstrators/4.3.1-genotyping.

Scientific topics: Data architecture, analysis and design
Keywords: data access, federated data analysis
Resource type: Video
Difficulty level: Beginner
Licence: Creative Commons Attribution Share-Alike 4.0
Authors: Kirill Tsukanov
Contributors: Alvaro Gonzalez