The video is aimed at presenting what is the Query Expansion (QE) and introducing all the QE services developed by WP1.
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The video is aimed at presenting what is Horizontal Expansion, a QE service that retrieves synonyms based on semantic similarities.
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The video is aimed at presenting what is the Vertical Expansion, a QE service that retrieves hypernyms and hyponyms aka the parents and the children of a concept in a specific ontology.
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The video is aimed at presenting what is the Data Driven Expansion, a QE service based on a word2vec algorithm trained on 2 million PubMed abstracts.
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This video provides an Overview of the FAIRsharing.org by Allyson Lister as part of the CINECA “How FAIR are you” webinar series and hackathon.
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This video describes the FAIRplus fairification wizard by Fuqi Xu (EMBL-EBI) as part of the CINECA “How FAIR are you” webinar series and hackathon.
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This video describes a common framework for designing portable federated pipelines. The joint cohort genotyping pipeline is provided as a specific implementation example. The ability of the pipeline to run in different environments, accessing the data via different protocols, and applying the appropriate normalisations is demonstrated.
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This video describes a community of practice for interoperable ontology building called the OBO Foundry, and highlights a number of well curated and maintained ontologies that are useful for annotating cohort data. The video is aimed at anyone interested in data standardization and/or the ontology approach (i.e. public, end users). No prerequisite knowledge is required, but viewers may also find our previous videos useful. This video is part of the CINECA online training series, where you can learn about concepts and tools relevant to federated analysis of cohort data.
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