Galactic Circos: User-friendly Circos plots within the Galaxy platform

Helena Rasche, Saskia Hiltemann

Rasche and Hiltemann have developed a Galaxy wrapper for Circos enabling the creation of publication-ready Circos plots using only a web browser. This version of Circos is available as an open-source installable application from the Galaxy ToolShed. Read the full publication here.

https://doi.org/10.1093/gigascience/giaa065 

Abstract

Background

Circos is a popular, highly flexible software package for the circular visualization of complex datasets. While especially popular in the field of genomic analysis, Circos enables interactive graphing of any analytical data, including alternative scientific domain data and non-scientific data. This high degree of flexibility also comes with a high degree of complexity, which may present an obstacle for researchers not trained in programming or the UNIX command line. The Galaxy platform provides a user-friendly browser-based graphical interface incorporating a broad range of “wrapped” command line tools to facilitate accessibility.

Findings

We have developed a Galaxy wrapper for Circos, thus combining the power of Circos with the accessibility and ease of use of the Galaxy platform. The combination substantially simplifies the specification and configuration of Circos plots for end users while retaining the power to produce publication-quality visualizations of complex multidimensional datasets.

Conclusions

Galactic Circos enables the creation of publication-ready Circos plots using only a web browser, via the Galaxy platform. Users may download the full set of Circos configuration files of their plots for further manual customization. This version of Circos is available as an open-source installable application from the Galaxy ToolShed, with its use clarified in a training manual hosted by the Galaxy Training Network.