This video explains why we need data standardization and how to annotate data using next generation biobanking ontology (NGBO).
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This video demonstrates how to annotate data using next generation biobanking ontology (NGBO).
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Harmonisation of attributes across different cohorts is very challenging and labour intensive, but critical to leverage the collective potential of the data. The CINECA text mining group aims to provide common tools and methods to extract additional metadata from structured and semi-structured fields in cohorts’ data.
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This video highlights examples of tools and ontologies which can be used for annotating health data, and how ontologies help to support data ecosystems.
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Ontologies are collections of well-defined, hierarchical, controlled vocabulary, linked by logical relationships. This video introduces the concept and benefits of implementing ontologies for solving data integration issues when data is generated by different research groups.
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This video explains how the Zooma annotation tool, the OxO mapping service and the Ontology Lookup Service (OLS) can be used to harmonise and enrich biological and biomedical data.
The EMBL-EBI Ontology Tools can be used by both biological curators and software developers. Biological curators access the tools through their respective websites. REST APIs are available for software developers who want to build systems based on these services.
Direct industrial participation in CINECA is made by the SMEs (Small and Medium-sized Enterprises) The Hyve and Clinicageno, both companies with an interest in bioinformatics applied to research and clinical genomic problems. The key background driver for their interest in a project like CINECA are the possibilities for long-term, sustainable profits in the areas of data-driven science and medicine in which the Hyve and Clinicageno specialise.
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This deliverable demonstrates authentication and authorisation interoperability between the ELIXIR and CanDIG infrastructures. Users from one infrastructure can access services from the other. The interoperability covers user identification and authentication as well as the transfer of the authorisation claims following the GA4GH Passport and AAI OpenID Connect protocol (OIDC) profile specifications.
https://doi.org/10.5281/zenodo.3938916
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